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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
42
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
121
Transcription
87
DNA accessibility
42
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
81
June, 2019
64
August, 2021
47
September, 2023
23
April, 2019
15
October, 2019
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
3
May, 2023
Available data
129
bam
119
bigWig
111
bed narrowPeak
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
260
Homo sapiens
Biosample type
224
tissue
36
primary cell
cell line
Organ
536
pancreas
535
connective tissue
429
adipose tissue
335
epithelium
315
liver
288
heart
282
brain
260
kidney
147
bone element
132
vasculature
126
blood vessel
114
limb
69
musculature of body
42
nerve
38
artery
33
eye
29
embryo
24
spleen
22
vein
20
lung
18
ureter
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
213
AMP
47
KPMP
Genome assembly (visualization)
118
GRCh38
117
hg19
Lab
146
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
Audit category:
8
inconsistent ontology term
7
audit script error
assay_title!
ATAC-seq
biosample_type!
cell line
month_released!
August, 2017
BIOSAMPLE
ASSAY
260 results
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DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
64
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
epithelial cell of proximal tubule
1
1
10
1
kidney epithelial cell
1
1
5
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
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