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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
ATAC-seq
64
single cell RNA-seq
54
total RNA-seq
31
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
119
Transcription
85
DNA accessibility
31
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
81
June, 2019
64
August, 2021
47
September, 2023
23
April, 2019
October, 2019
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
3
May, 2023
Available data
116
bam
109
bigWig
103
bed narrowPeak
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
62
txt
16
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
245
Homo sapiens
Biosample type
220
tissue
25
primary cell
cell line
Organ
721
pancreas
658
connective tissue
485
adipose tissue
362
liver
329
epithelium
280
heart
245
kidney
197
brain
147
bone element
95
musculature of body
86
vasculature
80
blood vessel
47
limb
29
embryo
24
spleen
20
lung
18
ureter
13
artery
13
eye
8
blood
8
bodily fluid
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
198
AMP
47
KPMP
Genome assembly (visualization)
108
GRCh38
107
hg19
Lab
131
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
Audit category:
8
inconsistent ontology term
7
audit script error
assay_title!
ATAC-seq
biosample_type!
cell line
month_released!
October, 2019
BIOSAMPLE
ASSAY
245 results
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DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
64
49
23
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
primary cell
kidney epithelial cell
1
1
5
1
epithelial cell of proximal tubule
1
1
3
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
+ See 3 more…
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