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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
73
ChIP-seq
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
389
Transcription
73
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
July, 2019
2
February, 2020
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
Available data
427
bam
409
bigWig
389
tsv
41
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
471
Homo sapiens
Biosample type
472
tissue
in vitro differentiated cells
Organ
785
pancreas
743
liver
561
connective tissue
472
adipose tissue
384
epithelium
324
heart
268
kidney
265
brain
180
vasculature
175
blood vessel
147
bone element
109
limb
94
artery
85
musculature of body
68
blood
68
bodily fluid
42
nerve
32
eye
24
spleen
22
vein
20
lung
18
ureter
8
embryo
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
472
AMP
Genome assembly (visualization)
409
GRCh38
408
hg19
Lab
472
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
biosample_type!
in vitro differentiated cells
month_released!
July, 2019
BIOSAMPLE
ASSAY
472 results
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total RNA-seq
ChIP-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
12
1
omental fat pad
1
11
2
white adipose tissue
12
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