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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
70
ChIP-seq
ATAC-seq
6
WGBS
3
DNase-seq
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
70
DNA binding
6
DNA methylation
3
DNA accessibility
Target of assay
70
histone
70
histone modification
40
broad histone mark
transcription factor
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
448
February, 2021
76
August, 2017
10
July, 2019
4
February, 2023
3
August, 2021
2
February, 2020
2
March, 2020
1
August, 2018
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
October, 2019
Available data
491
bigWig
490
bam
463
tsv
32
fastq
30
bed narrowPeak
19
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed narrowPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
550
Homo sapiens
Biosample type
500
tissue
50
in vitro differentiated cells
primary cell
1
stem cell
Organ
551
connective tissue
459
pancreas
442
adipose tissue
310
liver
299
heart
236
brain
226
kidney
146
bone element
128
blood vessel
128
vasculature
97
limb
80
artery
77
musculature of body
74
epithelium
31
nerve
28
eye
27
embryo
20
lung
18
ureter
10
spleen
5
gonad
5
ovary
4
skeleton
3
blood
3
bodily fluid
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
551
AMP
Genome assembly (visualization)
492
hg19
491
GRCh38
Lab
549
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
biosample_type!
primary cell
target.investigated_as!
control
transcription factor
BIOSAMPLE
ASSAY
551 results
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total RNA-seq
ChIP-seq
WGBS
DNase-seq
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
1
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
31
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
2
1
+ See 2 more…
in vitro differentiated cells
adipocyte
5
37
1
1
immature adipocyte
2
cardiac fibroblast
1
osteoblast
1
preadipocyte
1
+ See 1 more…
stem cell
mesenchymal stem cell
1
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