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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
Assay category
64
DNA binding
Target of assay
369
histone
369
histone modification
352
transcription factor
189
broad histone mark
179
narrow histone mark
141
control
73
recombinant protein
64
RNA binding protein
27
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
37
November, 2017
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
June, 2019
2
December, 2017
2
December, 2018
August, 2021
1
May, 2019
1
November, 2019
Available data
59
bam
57
bed narrowPeak
57
bigWig
53
fastq
52
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
1
tar
Organism
64
Homo sapiens
Biosample type
43
cell line
tissue
11
in vitro differentiated cells
10
primary cell
Organ
36
liver
8
blood
8
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
64
AMP
Genome assembly (visualization)
56
hg19
52
GRCh38
Lab
59
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent control run_type
assay_title!
ATAC-seq
biosample_type!
tissue
month_released!
August, 2021
November, 2018
BIOSAMPLE
ASSAY
64 results
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Clear Filters
ChIP-seq
cell line
HepG2
34
GM12878
8
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
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