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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
ChIP-seq
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
389
DNA binding
2
DNA accessibility
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
258
November, 2017
58
November, 2018
27
December, 2018
16
October, 2019
15
January, 2019
11
November, 2019
5
February, 2021
1
March, 2020
1
May, 2021
Available data
506
bigWig
496
bam
394
bed narrowPeak
365
fastq
355
bigBed narrowPeak
tsv
59
bed broadPeak
59
bigBed broadPeak
16
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
392
Homo sapiens
Biosample type
759
tissue
392
cell line
244
primary cell
117
in vitro differentiated cells
2
stem cell
Organ
304
liver
54
blood
54
bodily fluid
21
pancreas
14
epithelium
8
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
Project
390
AMP
2
T1D
Genome assembly (visualization)
382
hg19
349
GRCh38
Lab
392
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
tsv
target.investigated_as!
control
BIOSAMPLE
ASSAY
392 results
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ChIP-seq
DNase-seq
WGBS
cell line
HepG2
303
1
GM12878
54
EndoC_BH1
13
Panc1
7
1
smooth muscle cell of the coronary artery
4
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