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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
136
total RNA-seq
ATAC-seq
9
pCHi-C
5
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
187
DNA binding
140
Transcription
4
3D chromatin structure
Target of assay
102
histone
102
histone modification
51
narrow histone mark
50
broad histone mark
47
transcription factor
38
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
67
August, 2017
39
February, 2018
32
December, 2017
30
August, 2021
22
February, 2021
12
March, 2020
5
January, 2018
4
February, 2023
4
October, 2019
2
December, 2019
2
March, 2023
1
August, 2018
Available data
277
bam
250
bigWig
145
fastq
135
tsv
113
bed narrowPeak
40
tagAlign
24
bed bed3+
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
345
Homo sapiens
Biosample type
1955
tissue
801
primary cell
337
in vitro differentiated cells
278
cell line
10
stem cell
Organ
80
connective tissue
29
embryo
10
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
345
AMP
2
community
Genome assembly (visualization)
243
hg19
236
GRCh38
5
hg18
Lab
301
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
Audit category:
106
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
19
inconsistent control read length
assay_title!
ATAC-seq
files.file_type!
bigBed narrowPeak
month_released!
May, 2023
BIOSAMPLE
ASSAY
347 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
in vitro differentiated cells
adipocyte
67
5
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
+ See 27 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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