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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
ChIP-seq
136
total RNA-seq
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
184
DNA binding
138
Transcription
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
37
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
67
August, 2017
39
February, 2018
30
August, 2021
29
December, 2017
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
274
bam
247
bigWig
141
fastq
131
tsv
111
bed narrowPeak
40
tagAlign
21
bed bed3+
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
bigBed broadPeak
Organism
337
Homo sapiens
Biosample type
1959
tissue
799
primary cell
337
in vitro differentiated cells
272
cell line
10
stem cell
Organ
79
connective tissue
29
embryo
10
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
337
AMP
Genome assembly (visualization)
240
hg19
233
GRCh38
4
hg18
Lab
293
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
ATAC-seq
files.file_type!
bigBed broadPeak
bigBed narrowPeak
target.investigated_as!
other context
BIOSAMPLE
ASSAY
337 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
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