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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
83
DNA binding
11
Transcription
4
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
20
August, 2017
10
August, 2021
9
December, 2017
8
February, 2018
6
March, 2020
4
February, 2023
2
December, 2019
2
October, 2019
1
August, 2018
Available data
274
bam
bigWig
141
fastq
131
tsv
111
bed narrowPeak
40
tagAlign
21
bed bed3+
15
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
105
Homo sapiens
Biosample type
785
tissue
353
primary cell
105
in vitro differentiated cells
94
cell line
7
stem cell
Organ
27
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
105
AMP
Genome assembly (visualization)
13
hg19
5
GRCh38
Lab
61
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bigWig
lab.title!
Bing Ren, UCSD
month_released!
March, 2019
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
20
1
1
neural progenitor cell
8
cardiomyocytes (cardiac muscle cell)
2
2
2
pancreatic endoderm
6
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