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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
total RNA-seq
41
ChIP-seq
ATAC-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
118
Transcription
41
DNA binding
4
3D chromatin structure
Target of assay
27
histone
27
histone modification
15
broad histone mark
12
narrow histone mark
10
control
4
transcription factor
Date released
85
May, 2021
30
August, 2021
22
February, 2021
14
August, 2017
8
March, 2020
4
February, 2023
4
October, 2019
2
December, 2019
Available data
274
bam
247
bigWig
fastq
131
tsv
111
bed narrowPeak
40
tagAlign
21
bed bed3+
15
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
169
Homo sapiens
Biosample type
2152
tissue
272
primary cell
201
cell line
169
in vitro differentiated cells
6
stem cell
Organ
25
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
169
AMP
Genome assembly (visualization)
137
hg19
130
GRCh38
Lab
167
AMP-T2D consortium
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
101
inconsistent ontology term
2
audit script error
assay_title!
ATAC-seq
files.file_type!
fastq
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
169 results
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total RNA-seq
ChIP-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
21
adipocyte
5
14
1
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
2
2
2
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