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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
86
ChIP-seq
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
86
DNA binding
4
3D chromatin structure
1
DNA accessibility
Target of assay
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
106
May, 2021
31
August, 2017
23
February, 2018
22
February, 2021
19
December, 2017
16
August, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
195
bam
169
bigWig
131
tsv
76
fastq
33
bed narrowPeak
14
tagAlign
13
bed bed3+
7
bedpe bed3+
4
hic
3
bigBed narrowPeak
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
240
Homo sapiens
Biosample type
1678
tissue
645
primary cell
594
cell line
240
in vitro differentiated cells
8
stem cell
Organ
43
connective tissue
17
embryo
9
epithelium
3
liver
2
pancreas
1
adipose tissue
1
heart
Project
240
AMP
Genome assembly (visualization)
178
hg19
170
GRCh38
4
hg18
Lab
216
AMP-T2D consortium
22
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
103
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
assay_title!
ATAC-seq
files.file_type!
txt
organ_slims!
musculature of body
target.investigated_as!
histone
BIOSAMPLE
ASSAY
240 results
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total RNA-seq
ChIP-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
30
1
1
embryonic stem cell
7
18
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
7
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