Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
136
total RNA-seq
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
142
DNA binding
138
Transcription
4
3D chromatin structure
1
DNA accessibility
Target of assay
112
histone
112
histone modification
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
117
May, 2021
48
August, 2017
32
December, 2017
31
February, 2018
23
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
237
bam
210
bigWig
131
tsv
110
fastq
74
bed narrowPeak
26
tagAlign
17
bed bed3+
8
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
296
Homo sapiens
Biosample type
2140
tissue
735
primary cell
581
cell line
296
in vitro differentiated cells
9
stem cell
Organ
60
connective tissue
25
embryo
17
epithelium
8
liver
3
pancreas
1
adipose tissue
1
heart
Project
296
AMP
Genome assembly (visualization)
219
hg19
211
GRCh38
4
hg18
Lab
262
AMP-T2D consortium
32
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
assay_title!
ATAC-seq
lab.title!
Bing Ren, UCSD
month_released!
July, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
296 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
47
5
1
1
embryonic stem cell
29
7
1
neural progenitor cell
14
7
cardiac precursors (cardiac muscle cell)
19
1
+ See 27 more…
See all biosamples
Download