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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
121
total RNA-seq
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
1
DNase-seq
Assay category
174
DNA binding
121
Transcription
4
3D chromatin structure
1
DNA accessibility
Target of assay
96
histone
96
histone modification
49
transcription factor
48
broad histone mark
47
narrow histone mark
29
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
43
December, 2017
February, 2018
30
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
December, 2019
1
August, 2018
Available data
235
bam
216
bigWig
114
tsv
102
fastq
95
bed narrowPeak
40
tagAlign
21
bed bed3+
15
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
311
Homo sapiens
Biosample type
2508
tissue
883
primary cell
633
cell line
311
in vitro differentiated cells
10
stem cell
Organ
80
connective tissue
24
epithelium
16
embryo
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
311
AMP
Genome assembly (visualization)
224
hg19
217
GRCh38
4
hg18
Lab
267
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
103
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
assay_title!
ATAC-seq
month_released!
December, 2019
February, 2018
September, 2017
BIOSAMPLE
ASSAY
311 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
67
5
1
1
cardiomyocytes
3
59
embryonic stem cell
37
5
1
neural progenitor cell
21
7
cardiac precursors (cardiac muscle cell)
19
1
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