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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
232
total RNA-seq
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
21
pCHi-C
5
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
RRBS
Assay category
418
Transcription
258
DNA binding
83
DNA accessibility
49
DNA methylation
5
3D chromatin structure
Target of assay
218
histone
218
histone modification
111
broad histone mark
107
narrow histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
56
August, 2017
56
September, 2020
55
June, 2019
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
October, 2019
July, 2019
9
November, 2017
8
January, 2021
5
December, 2019
5
March, 2020
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
December, 2017
3
June, 2018
3
March, 2023
3
October, 2022
2
October, 2018
1
January, 2018
1
November, 2018
Available data
493
bigWig
481
bam
381
fastq
242
tsv
239
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
74
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
34
bed bed3+
5
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
833
Homo sapiens
Biosample type
2220
tissue
825
primary cell
603
cell line
348
in vitro differentiated cells
10
stem cell
Organ
289
epithelium
275
pancreas
30
connective tissue
18
kidney
14
brain
11
liver
11
musculature of body
11
vasculature
8
blood
8
bodily fluid
8
heart
6
blood vessel
4
eye
1
bone element
1
bone marrow
1
vein
Project
353
AMP
275
HPAP
204
T1D
2
community
1
ITG
Genome assembly (visualization)
492
hg19
452
GRCh38
1
hg18
Lab
318
AMP-T2D consortium
275
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
41
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
month_released!
July, 2019
October, 2019
BIOSAMPLE
ASSAY
835 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
GRO-seq
RRBS
primary cell
monocyte
85
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
12
31
1
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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