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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
102
single cell RNA-seq
55
total RNA-seq
42
ChIP-seq
10
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
159
Transcription
42
DNA binding
11
DNA methylation
5
3D chromatin structure
Target of assay
29
control
16
histone
16
histone modification
10
narrow histone mark
6
broad histone mark
Date released
48
July, 2018
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
October, 2019
8
June, 2019
7
May, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
2
February, 2021
2
May, 2020
2
October, 2018
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
Available data
316
bam
297
bigWig
218
fastq
154
tsv
bed narrowPeak
74
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
1
bedpe bed3+
1
hic
Organism
218
Homo sapiens
Biosample type
1481
tissue
218
primary cell
193
in vitro differentiated cells
191
cell line
6
stem cell
Organ
135
epithelium
126
pancreas
21
connective tissue
10
brain
9
kidney
8
liver
8
vasculature
7
heart
6
blood vessel
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
1
vein
Project
218
AMP
Genome assembly (visualization)
186
hg19
166
GRCh38
Lab
275
Klaus Kaestner, Upenn
218
AMP-T2D consortium
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
14
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bed narrowPeak
month_released!
October, 2019
BIOSAMPLE
ASSAY
218 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
12
10
6
pancreatic beta cell
12
10
6
pancreatic acinar cell
12
4
pancreatic ductal cell
10
4
pancreatic endocrine cell
12
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