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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
247
total RNA-seq
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
24
DNase-seq
17
pCHi-C
9
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
433
Transcription
253
DNA binding
80
DNA accessibility
57
DNA methylation
5
3D chromatin structure
Target of assay
219
histone
219
histone modification
113
broad histone mark
106
narrow histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
56
August, 2017
56
September, 2020
50
June, 2019
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
24
July, 2019
11
October, 2019
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
500
bigWig
488
bam
368
fastq
255
tsv
232
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
63
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
27
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
1
hdf5
Organism
845
Homo sapiens
Biosample type
2255
tissue
845
primary cell
633
cell line
352
in vitro differentiated cells
10
stem cell
Organ
334
epithelium
275
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
365
AMP
275
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
506
hg19
461
GRCh38
Lab
330
AMP-T2D consortium
275
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
bedpe
organ_slims!
brain
vein
BIOSAMPLE
ASSAY
845 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
12
31
1
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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