Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
217
ChIP-seq
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
24
DNase-seq
17
pCHi-C
8
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
217
DNA binding
81
DNA accessibility
56
DNA methylation
3
3D chromatin structure
Target of assay
196
histone
196
histone modification
106
broad histone mark
90
narrow histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
193
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
August, 2017
56
September, 2020
50
June, 2019
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
32
October, 2019
24
July, 2019
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2023
1
November, 2018
Available data
472
bigWig
453
bam
313
fastq
255
tsv
215
bed narrowPeak
114
zippedFastqFolder
88
tagAlign
60
bigBed narrowPeak
29
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
bedpe bed3+
3
cool
2
csv
1
hdf5
1
tar
Organism
807
Homo sapiens
Biosample type
1964
tissue
807
primary cell
631
cell line
277
in vitro differentiated cells
10
stem cell
Organ
304
epithelium
234
pancreas
37
connective tissue
36
kidney
36
vasculature
30
blood vessel
brain
21
vein
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
330
AMP
272
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
475
hg19
434
GRCh38
Lab
295
AMP-T2D consortium
272
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
28
audit script error
Audit category:
32
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bedpe bed3+
month_released!
August, 2017
organ_slims!
brain
BIOSAMPLE
ASSAY
807 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
12
31
pancreatic beta cell
21
12
16
exocrine cell
39
+ See 80 more…
See all biosamples
Download