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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
ATAC-seq
127
total RNA-seq
59
single cell RNA-seq
41
WGBS
30
DNase-seq
29
snATAC-seq
17
pCHi-C
9
RRBS
4
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
188
Transcription
185
DNA binding
60
DNA accessibility
51
DNA methylation
4
3D chromatin structure
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
193
May, 2021
95
May, 2022
55
June, 2019
47
May, 2020
31
July, 2019
31
October, 2019
18
September, 2020
8
January, 2021
5
April, 2018
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
2
February, 2021
1
August, 2017
Available data
535
bigWig
525
bam
fastq
258
tsv
256
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
505
Homo sapiens
Biosample type
2158
tissue
505
primary cell
207
in vitro differentiated cells
204
cell line
6
stem cell
Organ
123
epithelium
46
pancreas
36
kidney
34
connective tissue
29
vasculature
26
blood vessel
20
vein
14
musculature of body
13
heart
13
liver
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
204
T1D
188
AMP
113
HPAP
Genome assembly (visualization)
335
hg19
289
GRCh38
Lab
239
Kyle Gaulton, UCSD
153
AMP-T2D consortium
113
Klaus Kaestner, Upenn
Audit category:
35
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
fastq
hic
BIOSAMPLE
ASSAY
505 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
1
1
Langerhans cell
51
21
CD8-positive, alpha-beta T cell
33
4
1
pancreatic alpha cell
25
endothelial cell of umbilical vein
17
2
1
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