Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
68
ChIP-seq
30
DNase-seq
29
total RNA-seq
9
RRBS
8
single cell RNA-seq
4
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
68
DNA binding
39
Transcription
31
DNA accessibility
10
DNA methylation
4
3D chromatin structure
Target of assay
50
histone
50
histone modification
25
broad histone mark
25
narrow histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
55
June, 2019
31
July, 2019
31
October, 2019
7
May, 2021
5
April, 2018
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
2
February, 2021
2
May, 2020
1
August, 2017
Available data
345
bam
320
bigWig
fastq
156
tsv
142
bed narrowPeak
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
hic
1
bedpe bed3+
1
tar
Organism
153
Homo sapiens
Biosample type
1943
tissue
163
in vitro differentiated cells
158
cell line
153
primary cell
4
stem cell
Organ
82
epithelium
36
kidney
33
connective tissue
29
vasculature
26
blood vessel
20
vein
14
musculature of body
13
heart
13
liver
12
brain
5
eye
5
pancreas
2
adipose tissue
2
artery
1
pericardium
Project
153
AMP
Genome assembly (visualization)
120
hg19
109
GRCh38
Lab
239
Kyle Gaulton, UCSD
153
AMP-T2D consortium
113
Klaus Kaestner, Upenn
Audit category:
30
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
fastq
hic
BIOSAMPLE
ASSAY
153 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
RRBS
single cell RNA-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
1
epithelial cell of proximal tubule
10
1
1
1
hepatocyte
4
1
5
1
skeletal muscle satellite cell
8
1
1
cardiac fibroblast
5
3
1
+ See 37 more…
See all biosamples
Download