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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
30
DNase-seq
29
total RNA-seq
18
ChIP-seq
9
RRBS
8
single cell RNA-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
39
Transcription
31
DNA accessibility
18
DNA binding
10
DNA methylation
6
3D chromatin structure
Target of assay
50
histone
histone modification
25
broad histone mark
25
narrow histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
36
June, 2019
31
July, 2019
11
October, 2019
5
April, 2018
5
December, 2019
5
November, 2020
3
May, 2021
2
February, 2021
2
May, 2019
2
May, 2020
1
August, 2017
1
August, 2021
1
March, 2020
Available data
226
bam
204
bigWig
156
tsv
fastq
40
bed narrowPeak
40
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
2
tagAlign
1
bedpe bed3+
1
tar
Organism
105
Homo sapiens
Biosample type
1433
tissue
140
cell line
140
in vitro differentiated cells
105
primary cell
4
stem cell
Organ
55
epithelium
26
kidney
25
connective tissue
16
vasculature
13
blood vessel
12
brain
11
heart
10
liver
7
vein
6
musculature of body
5
pancreas
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
105
AMP
Genome assembly (visualization)
79
hg19
68
GRCh38
Lab
125
Kyle Gaulton, UCSD
116
Klaus Kaestner, Upenn
105
AMP-T2D consortium
1
ITG
Audit category:
13
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
files.file_type!
fastq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
105 results
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DNase-seq
total RNA-seq
ChIP-seq
RRBS
single cell RNA-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
hepatocyte
1
5
1
1
cardiac fibroblast
3
3
1
endothelial cell of umbilical vein
2
2
2
1
osteoblast
1
5
1
epithelial cell of proximal tubule
1
1
3
1
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