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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
2
DNase-seq
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
4
DNA binding
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
4
August, 2021
2
July, 2019
2
June, 2019
Available data
11
bam
11
bigWig
6
bed bed3+
5
bed narrowPeak
5
tsv
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
13
Homo sapiens
Biosample type
399
cell line
340
tissue
15
in vitro differentiated cells
13
primary cell
Organ
334
epithelium
275
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
13
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
13
AMP-T2D consortium
assay_title!
ATAC-seq
files.file_type!
vcf
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
13 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
Hi-C
RRBS
primary cell
hepatocyte
5
4
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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