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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
ATAC-seq
2
small RNA-seq
1
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
252
Transcription
221
DNA binding
2
DNA accessibility
Target of assay
187
histone
187
histone modification
95
narrow histone mark
92
broad histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
136
May, 2021
58
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
41
August, 2017
31
June, 2019
25
October, 2019
18
July, 2019
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
2
February, 2021
2
October, 2018
Available data
535
bigWig
525
bam
377
fastq
258
tsv
256
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
87
bigBed narrowPeak
49
bed broadPeak
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
476
Homo sapiens
Biosample type
1667
tissue
505
cell line
476
primary cell
245
in vitro differentiated cells
3
stem cell
Organ
197
epithelium
172
pancreas
28
connective tissue
21
kidney
20
vasculature
19
blood vessel
16
vein
12
musculature of body
9
heart
9
liver
6
brain
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
296
AMP
180
T1D
Genome assembly (visualization)
448
hg19
441
GRCh38
Lab
296
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
files.file_type!
bigBed broadPeak
organ_slims!
embryo
BIOSAMPLE
ASSAY
476 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
DNase-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
pancreatic alpha cell
13
10
12
pancreatic beta cell
13
10
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
4
12
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