Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
137
total RNA-seq
97
single cell RNA-seq
ATAC-seq
29
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
242
DNA binding
234
Transcription
30
DNA accessibility
Target of assay
203
histone
203
histone modification
103
narrow histone mark
100
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
136
May, 2021
58
September, 2018
55
August, 2017
55
June, 2019
48
July, 2018
45
May, 2020
43
April, 2018
29
October, 2019
July, 2019
9
November, 2017
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
2
February, 2021
2
October, 2018
Available data
513
bigWig
507
bam
377
fastq
256
bed narrowPeak
240
tsv
114
zippedFastqFolder
100
tagAlign
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
507
Homo sapiens
Biosample type
1785
tissue
572
cell line
507
primary cell
274
in vitro differentiated cells
3
stem cell
Organ
214
epithelium
172
pancreas
30
vasculature
28
connective tissue
27
kidney
25
blood vessel
20
vein
14
brain
11
liver
11
musculature of body
8
heart
4
eye
Project
327
AMP
180
T1D
Genome assembly (visualization)
472
hg19
468
GRCh38
Lab
327
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
39
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
month_released!
July, 2019
BIOSAMPLE
ASSAY
507 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
pancreatic alpha cell
13
10
12
pancreatic beta cell
13
10
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
4
12
+ See 63 more…
See all biosamples
Download