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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
117
ChIP-seq
85
single cell RNA-seq
56
snATAC-seq
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
Assay category
275
Transcription
117
DNA binding
56
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
186
May, 2021
95
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
3
October, 2022
1
March, 2023
Available data
215
bigWig
180
bam
159
fastq
114
bed narrowPeak
114
zippedFastqFolder
102
tsv
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
515
Homo sapiens
Biosample type
515
primary cell
223
tissue
47
cell line
44
in vitro differentiated cells
2
stem cell
Organ
103
epithelium
103
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
275
HPAP
204
T1D
35
AMP
1
ITG
Genome assembly (visualization)
218
hg19
181
GRCh38
Lab
AMP-T2D consortium
275
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
assay_title!
ATAC-seq
lab.title!
AMP-T2D consortium
target.investigated_as!
other context
BIOSAMPLE
ASSAY
515 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
31
1
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
1
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