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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
242
ChIP-seq
ATAC-seq
139
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
7
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
388
Transcription
242
DNA binding
64
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
27
control
6
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
56
September, 2020
54
August, 2017
June, 2019
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
32
October, 2019
31
July, 2019
8
January, 2021
6
November, 2017
5
December, 2019
5
November, 2020
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
434
bigWig
416
bam
324
fastq
210
tsv
203
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
34
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
779
Homo sapiens
Biosample type
2140
tissue
779
primary cell
303
in vitro differentiated cells
272
cell line
10
stem cell
Organ
278
epithelium
238
pancreas
31
vasculature
28
blood vessel
22
kidney
22
vein
18
connective tissue
13
brain
11
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
299
AMP
275
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
450
hg19
387
GRCh38
Lab
275
Klaus Kaestner, Upenn
264
AMP-T2D consortium
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
10
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
month_released!
July, 2018
June, 2019
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
779 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
13
5
31
1
pancreatic beta cell
21
13
3
16
1
exocrine cell
39
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