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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
245
total RNA-seq
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
17
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
253
DNA binding
81
DNA accessibility
57
DNA methylation
6
3D chromatin structure
Target of assay
219
histone
219
histone modification
113
broad histone mark
106
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
56
August, 2017
56
September, 2020
51
June, 2019
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
26
July, 2019
11
October, 2019
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
503
bigWig
490
bam
368
fastq
256
tsv
233
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
64
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
Organism
848
Homo sapiens
Biosample type
2340
tissue
848
primary cell
352
in vitro differentiated cells
260
cell line
10
stem cell
Organ
328
epithelium
275
pancreas
37
connective tissue
36
kidney
vasculature
28
blood vessel
22
vein
14
musculature of body
13
heart
13
liver
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
368
AMP
275
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
510
hg19
463
GRCh38
Lab
333
AMP-T2D consortium
275
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
month_released!
November, 2017
organ_slims!
vasculature
BIOSAMPLE
ASSAY
848 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
12
31
1
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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