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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
ATAC-seq
178
DNase-seq
171
single cell RNA-seq
87
RNA microarray
28
pCHi-C
27
WGBS
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
1220
Transcription
907
DNA binding
200
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
630
histone modification
629
histone
325
narrow histone mark
304
broad histone mark
188
control
94
transcription factor
28
RNA binding protein
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
282
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
51
December, 2017
47
September, 2023
41
March, 2020
40
May, 2021
40
May, 2024
28
May, 2022
25
February, 2020
23
November, 2018
20
November, 2019
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
2
March, 2023
1
August, 2022
1
January, 2018
1
March, 2019
Available data
1843
bam
1729
bigWig
1078
tsv
775
bed narrowPeak
555
bigBed narrowPeak
349
fastq
238
tagAlign
211
bed broadPeak
208
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2494
Homo sapiens
Biosample type
2494
tissue
888
primary cell
631
cell line
352
in vitro differentiated cells
10
stem cell
Organ
542
connective tissue
482
adipose tissue
443
pancreas
340
liver
274
heart
261
brain
224
kidney
146
bone element
114
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
21
spleen
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2435
AMP
47
KPMP
20
T1D
2
community
Genome assembly (visualization)
1701
GRCh38
1633
hg19
1
hg18
Lab
2298
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
organ_slims!
lung
target.investigated_as!
other context
BIOSAMPLE
ASSAY
2504 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
islet of Langerhans
292
71
1
6
4
7
3
1
1
4
adipose tissue
382
2
1
3
liver
167
145
2
1
1
3
1
1
1
kidney
49
27
13
64
6
1
1
1
bone element
84
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stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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