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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
911
total RNA-seq
604
ChIP-seq
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
1107
Transcription
604
DNA binding
210
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
204
August, 2017
193
May, 2020
187
October, 2019
165
August, 2021
163
June, 2019
July, 2018
59
May, 2019
57
July, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
May, 2021
40
November, 2017
38
March, 2020
28
May, 2022
25
February, 2020
20
May, 2024
20
November, 2018
20
November, 2019
19
April, 2020
16
February, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
October, 2017
4
May, 2023
4
November, 2020
3
December, 2019
3
January, 2019
1
August, 2022
1
March, 2019
Available data
1505
bam
1360
bigWig
959
tsv
523
bed narrowPeak
354
bigBed narrowPeak
301
fastq
199
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
162
tagAlign
157
txt
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2064
Homo sapiens
Biosample type
2069
tissue
708
primary cell
613
cell line
296
in vitro differentiated cells
9
stem cell
Organ
519
connective tissue
460
adipose tissue
314
liver
276
pancreas
213
kidney
210
heart
190
brain
146
bone element
79
limb
62
musculature of body
58
blood vessel
58
vasculature
28
eye
26
nerve
22
artery
20
lung
18
spleen
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1983
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1327
GRCh38
1310
hg19
Lab
1866
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
ATAC-seq
files.file_type!
bed bedMethyl
month_released!
July, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2069 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
adipose tissue
382
2
1
1
liver
167
123
1
2
1
1
1
3
islet of Langerhans
172
57
6
1
7
4
3
1
4
kidney
49
17
64
13
6
1
1
bone element
84
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