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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
844
ChIP-seq
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1227
Transcription
844
DNA binding
38
DNA methylation
34
DNA accessibility
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
254
August, 2017
222
October, 2019
193
May, 2020
165
August, 2021
120
July, 2018
111
May, 2019
76
April, 2019
76
November, 2017
71
July, 2019
63
October, 2018
47
September, 2023
46
December, 2017
40
May, 2021
38
March, 2020
35
May, 2024
28
May, 2022
25
February, 2020
20
November, 2019
19
April, 2020
17
November, 2018
16
February, 2023
12
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1820
bam
1702
bigWig
1075
tsv
750
bed narrowPeak
538
bigBed narrowPeak
333
fastq
238
tagAlign
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2275
Homo sapiens
Biosample type
2278
tissue
834
primary cell
513
cell line
340
in vitro differentiated cells
10
stem cell
Organ
533
connective tissue
474
adipose tissue
417
pancreas
335
liver
237
heart
225
brain
155
kidney
146
bone element
87
blood vessel
87
vasculature
78
limb
40
nerve
36
musculature of body
31
artery
25
eye
23
spleen
20
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2192
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1484
GRCh38
1416
hg19
Lab
2060
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
35
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
ATAC-seq
files.file_type!
bed broadPeak
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2278 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
63
6
7
4
3
1
1
4
1
liver
167
144
1
3
1
1
1
1
kidney
49
26
64
6
1
1
1
bone element
84
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