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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
954
total RNA-seq
296
ChIP-seq
87
single cell RNA-seq
ATAC-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
1
DNase-seq
Assay category
1056
Transcription
296
DNA binding
29
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
171
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
395
February, 2021
218
August, 2017
166
May, 2020
120
July, 2018
74
October, 2019
73
August, 2021
53
July, 2019
47
September, 2023
38
May, 2021
29
March, 2020
29
October, 2018
28
May, 2022
24
November, 2017
22
February, 2020
20
November, 2019
19
April, 2020
16
May, 2019
12
December, 2017
11
February, 2023
9
November, 2018
9
October, 2017
8
January, 2021
6
April, 2018
6
September, 2017
5
April, 2019
4
December, 2018
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2019
1
March, 2019
Available data
1657
bam
1518
bigWig
906
tsv
bed narrowPeak
470
bigBed narrowPeak
348
fastq
238
tagAlign
184
bed broadPeak
178
bed bed3+
149
bigBed broadPeak
69
txt
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1452
Homo sapiens
Biosample type
1455
tissue
624
primary cell
240
in vitro differentiated cells
185
cell line
8
stem cell
Organ
532
connective tissue
473
adipose tissue
361
pancreas
248
liver
bone element
heart
135
kidney
69
brain
33
blood vessel
33
vasculature
30
limb
30
musculature of body
25
eye
20
lung
16
nerve
11
artery
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1371
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
890
hg19
883
GRCh38
Lab
1272
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
9
audit script error
3
inconsistent ontology term
Audit category:
22
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bed narrowPeak
organ_slims!
bone element
heart
BIOSAMPLE
ASSAY
1455 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
RNA microarray
snDrop-seq
DNase-seq
tissue
adipose tissue
382
1
1
3
islet of Langerhans
292
51
6
7
4
3
1
4
liver
167
63
1
1
3
1
1
1
kidney
49
7
64
6
1
1
subcutaneous abdominal adipose tissue
35
3
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