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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
919
total RNA-seq
305
ChIP-seq
116
single cell RNA-seq
ATAC-seq
27
WGBS
25
pCHi-C
22
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
1
DNase-seq
1
RNA microarray
Assay category
1050
Transcription
305
DNA binding
37
DNA methylation
23
DNA accessibility
15
3D chromatin structure
Target of assay
181
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
18
transcription factor
2
nucleotide modification
1
RNA binding protein
Date released
387
February, 2021
218
August, 2017
166
May, 2020
120
July, 2018
101
August, 2021
75
October, 2019
66
July, 2019
40
May, 2021
36
March, 2020
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
20
November, 2019
19
April, 2020
12
December, 2017
12
February, 2023
10
April, 2019
9
November, 2018
9
October, 2017
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
November, 2020
1
August, 2022
1
January, 2019
1
March, 2019
1
May, 2023
Available data
1687
bam
1580
bigWig
1005
tsv
bed narrowPeak
471
bigBed narrowPeak
348
fastq
238
tagAlign
143
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
7
txt
1
bedpe
1
csv
1
tagAlign bed3+
Organism
1457
Homo sapiens
Biosample type
1460
tissue
617
primary cell
241
in vitro differentiated cells
228
cell line
8
stem cell
Organ
532
connective tissue
473
adipose tissue
361
pancreas
248
liver
bone element
140
heart
kidney
69
brain
33
blood vessel
33
vasculature
30
limb
30
musculature of body
25
eye
20
lung
16
nerve
11
artery
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1423
AMP
19
LungMap
18
T1D
Genome assembly (visualization)
903
hg19
900
GRCh38
Lab
1391
AMP-T2D consortium
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
2
audit script error
Audit category:
22
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bed narrowPeak
organ_slims!
bone element
kidney
BIOSAMPLE
ASSAY
1460 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
1
3
1
islet of Langerhans
292
51
6
4
7
3
1
4
liver
167
63
1
3
1
1
1
1
subcutaneous abdominal adipose tissue
35
3
heart left ventricle
3
6
18
4
1
1
1
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