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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
813
ChIP-seq
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
6
Hi-C
4
FAIRE-seq
3
snDrop-seq
Assay category
1227
Transcription
813
DNA binding
210
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
537
February, 2021
259
August, 2017
225
October, 2019
193
May, 2020
164
August, 2021
163
June, 2019
120
July, 2018
111
May, 2019
82
November, 2017
74
April, 2019
71
July, 2019
59
October, 2018
47
September, 2023
40
May, 2021
35
May, 2024
31
March, 2020
28
May, 2022
25
February, 2020
19
April, 2020
19
November, 2018
19
November, 2019
17
December, 2017
16
February, 2023
15
October, 2017
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
4
December, 2018
4
May, 2023
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1754
bam
1636
bigWig
1075
tsv
701
bed narrowPeak
493
bigBed narrowPeak
269
fastq
238
tagAlign
211
bed broadPeak
192
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2400
Homo sapiens
Biosample type
2409
tissue
869
primary cell
296
in vitro differentiated cells
264
cell line
10
stem cell
Organ
524
connective tissue
465
adipose tissue
419
pancreas
300
liver
261
brain
259
heart
223
kidney
146
bone element
114
limb
91
blood vessel
91
vasculature
79
musculature of body
42
nerve
35
artery
28
eye
20
lung
18
spleen
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2323
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1608
GRCh38
1536
hg19
Lab
2196
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
35
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
2
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
files.file_type!
bedpe bed3+
month_released!
November, 2020
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2409 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
64
6
1
7
4
1
1
1
liver
167
108
1
2
3
1
1
1
kidney
49
26
64
13
6
1
1
1
bone element
84
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