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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
291
ChIP-seq
ATAC-seq
174
single cell RNA-seq
136
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
12
Hi-C
7
WGBS
5
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
310
Transcription
291
DNA binding
29
DNA accessibility
12
3D chromatin structure
12
DNA methylation
Target of assay
187
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
RNA binding protein
1
transcription factor
Date released
165
August, 2021
106
August, 2017
93
February, 2021
69
October, 2019
47
September, 2023
29
March, 2020
29
October, 2018
28
May, 2022
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
19
April, 2020
16
February, 2023
14
April, 2019
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
6
September, 2017
4
December, 2018
4
July, 2018
4
May, 2023
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
March, 2019
1
November, 2019
Available data
1762
bam
bigWig
1028
tsv
748
bed narrowPeak
536
bigBed narrowPeak
333
fastq
238
tagAlign
211
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
157
txt
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
770
Homo sapiens
Biosample type
773
tissue
344
primary cell
112
cell line
100
in vitro differentiated cells
7
stem cell
Organ
131
kidney
118
heart
95
liver
88
bone element
75
pancreas
64
connective tissue
63
adipose tissue
60
brain
27
blood vessel
27
vasculature
25
eye
21
limb
21
musculature of body
20
lung
12
nerve
11
artery
9
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
689
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
21
hg19
7
GRCh38
Lab
590
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bigWig
month_released!
July, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
773 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
6
64
49
6
1
islet of Langerhans
42
32
7
4
3
4
liver
63
1
20
1
1
3
1
bone element
84
subcutaneous abdominal adipose tissue
35
3
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