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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
309
ChIP-seq
ATAC-seq
174
single cell RNA-seq
168
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1124
Transcription
309
DNA binding
198
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
465
histone
465
histone modification
narrow histone mark
202
broad histone mark
98
control
11
transcription factor
9
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
166
May, 2020
165
August, 2021
163
June, 2019
118
July, 2018
97
October, 2019
May, 2019
77
August, 2017
71
July, 2019
57
April, 2019
54
November, 2017
47
September, 2023
40
May, 2021
36
March, 2020
25
February, 2020
25
May, 2024
22
May, 2022
20
November, 2019
19
April, 2020
16
February, 2023
10
October, 2018
8
January, 2021
5
October, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1518
bam
1401
bigWig
1075
tsv
450
bed narrowPeak
390
bigBed narrowPeak
fastq
199
bed bed3+
196
bed broadPeak
176
bigBed broadPeak
157
txt
128
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
1789
Homo sapiens
Biosample type
1791
tissue
432
primary cell
195
cell line
189
in vitro differentiated cells
6
stem cell
Organ
488
connective tissue
430
adipose tissue
238
pancreas
221
heart
221
liver
214
kidney
146
bone element
119
brain
94
limb
65
musculature of body
41
blood vessel
41
vasculature
34
nerve
27
artery
26
eye
20
lung
18
ureter
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1707
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
1148
GRCh38
1095
hg19
Lab
1589
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
17
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
assay_title!
ATAC-seq
files.file_type!
fastq
month_released!
May, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1791 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
1
islet of Langerhans
195
14
7
4
3
1
4
liver
167
41
1
1
2
1
1
kidney
49
17
64
13
6
1
1
1
bone element
84
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