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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
912
total RNA-seq
273
ChIP-seq
ATAC-seq
174
single cell RNA-seq
164
DNase-seq
87
RNA microarray
28
snATAC-seq
21
pCHi-C
17
WGBS
16
small RNA-seq
15
Hi-C
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1102
Transcription
273
DNA binding
194
DNA accessibility
25
DNA methylation
15
3D chromatin structure
Target of assay
386
histone
386
histone modification
broad histone mark
167
narrow histone mark
93
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
193
May, 2020
October, 2019
165
August, 2021
163
June, 2019
118
July, 2018
71
July, 2019
59
May, 2019
57
August, 2017
47
September, 2023
43
April, 2019
40
May, 2021
40
November, 2017
38
March, 2020
25
February, 2020
22
May, 2022
20
May, 2024
20
November, 2019
19
April, 2020
16
February, 2023
8
January, 2021
8
October, 2018
4
May, 2023
4
November, 2020
3
December, 2019
2
October, 2017
1
August, 2022
1
March, 2019
Available data
1476
bam
1358
bigWig
1067
tsv
413
bed narrowPeak
338
bigBed narrowPeak
fastq
195
bed bed3+
187
bed broadPeak
172
bigBed broadPeak
157
txt
113
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
Organism
1722
Homo sapiens
Biosample type
1724
tissue
402
primary cell
182
in vitro differentiated cells
169
cell line
6
stem cell
Organ
479
connective tissue
421
adipose tissue
240
liver
238
pancreas
212
heart
210
kidney
146
bone element
104
brain
63
musculature of body
48
blood vessel
48
vasculature
43
limb
20
lung
18
ureter
11
artery
8
eye
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1638
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1113
GRCh38
1091
hg19
Lab
1527
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
17
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
assay_title!
ATAC-seq
files.file_type!
fastq
month_released!
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1724 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
1
liver
166
61
1
1
2
1
1
islet of Langerhans
181
14
7
3
1
4
kidney
49
13
64
13
6
1
1
1
bone element
84
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