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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1014
total RNA-seq
568
ChIP-seq
ATAC-seq
180
single cell RNA-seq
144
DNase-seq
87
RNA microarray
28
snATAC-seq
23
pCHi-C
21
WGBS
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1206
Transcription
568
DNA binding
174
DNA accessibility
31
DNA methylation
16
3D chromatin structure
Target of assay
357
histone modification
356
histone
202
broad histone mark
154
narrow histone mark
126
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
223
August, 2017
165
August, 2021
143
May, 2020
138
June, 2019
130
October, 2019
120
July, 2018
87
May, 2019
80
April, 2019
74
October, 2018
61
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
36
March, 2020
28
May, 2022
November, 2018
20
November, 2019
19
April, 2020
16
February, 2023
13
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1595
bam
1508
bigWig
1052
tsv
569
bed narrowPeak
427
bigBed narrowPeak
313
fastq
171
bed bed3+
168
bed broadPeak
157
txt
142
bigBed broadPeak
tagAlign
18
bed bedMethyl
18
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2110
Homo sapiens
Biosample type
2112
tissue
766
primary cell
552
cell line
312
in vitro differentiated cells
10
stem cell
Organ
532
connective tissue
473
adipose tissue
420
pancreas
274
heart
263
liver
224
kidney
146
bone element
brain
114
limb
95
blood vessel
95
vasculature
66
musculature of body
42
nerve
36
artery
28
eye
20
lung
18
ureter
15
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2026
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1446
GRCh38
1414
hg19
Lab
1889
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
ATAC-seq
files.file_type!
tagAlign
month_released!
November, 2018
organ_slims!
brain
BIOSAMPLE
ASSAY
2112 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
1
3
islet of Langerhans
292
62
6
1
7
4
3
1
4
1
liver
167
71
1
1
3
1
1
1
kidney
49
27
64
13
6
1
1
1
bone element
84
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