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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
345
ChIP-seq
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
923
Transcription
345
DNA binding
17
DNA methylation
Target of assay
167
control
154
histone modification
153
histone
135
narrow histone mark
24
transcription factor
18
broad histone mark
3
RNA binding protein
Date released
444
February, 2021
193
May, 2020
148
August, 2017
138
October, 2019
116
July, 2018
56
July, 2019
38
May, 2021
29
October, 2018
22
May, 2019
19
November, 2019
15
April, 2019
12
December, 2017
12
November, 2017
9
March, 2020
9
November, 2018
6
April, 2018
6
May, 2022
6
September, 2017
4
December, 2018
2
October, 2017
1
January, 2019
Available data
1843
bam
1729
bigWig
1075
tsv
776
bed narrowPeak
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1284
Homo sapiens
Biosample type
1285
tissue
438
primary cell
259
in vitro differentiated cells
217
cell line
3
stem cell
Organ
487
connective tissue
429
adipose tissue
325
pancreas
239
liver
108
brain
58
bone element
40
heart
22
blood vessel
22
limb
22
vasculature
15
nerve
11
kidney
10
spleen
7
artery
6
musculature of body
1
pituitary gland
Project
1283
AMP
2
T1D
Genome assembly (visualization)
1105
GRCh38
1097
hg19
Lab
1279
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
22
missing controlled_by
assay_title!
ATAC-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
1285 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
30
6
liver
147
84
1
bone tissue
58
subcutaneous adipose tissue
6
10
1
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