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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
538
ChIP-seq
172
DNase-seq
ATAC-seq
4
FAIRE-seq
Assay category
538
DNA binding
176
DNA accessibility
Target of assay
466
histone modification
465
histone
248
narrow histone mark
217
broad histone mark
72
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
160
June, 2019
129
October, 2019
65
April, 2019
64
August, 2017
58
November, 2017
54
May, 2019
45
October, 2018
40
May, 2024
36
December, 2017
27
May, 2020
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
2
March, 2020
Available data
1759
bam
1662
bigWig
1061
tsv
714
bed narrowPeak
496
bigBed narrowPeak
348
fastq
238
tagAlign
206
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
708
Homo sapiens
Biosample type
714
tissue
390
cell line
235
primary cell
111
in vitro differentiated cells
2
stem cell
Organ
192
brain
134
heart
92
liver
89
kidney
84
limb
82
pancreas
62
blood vessel
vasculature
51
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
9
adipose tissue
9
connective tissue
3
eye
1
pituitary gland
Project
712
AMP
2
T1D
Genome assembly (visualization)
679
GRCh38
606
hg19
Lab
674
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
organ_slims!
lymph node
vasculature
BIOSAMPLE
ASSAY
714 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
liver
82
2
left cardiac atrium
40
1
kidney
20
13
1
heart left ventricle
29
3
body of pancreas
26
4
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