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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
924
total RNA-seq
109
single cell RNA-seq
20
pCHi-C
16
small RNA-seq
3
snDrop-seq
2
RNA microarray
ATAC-seq
Assay category
1049
Transcription
Date released
452
February, 2021
143
May, 2020
116
July, 2018
98
August, 2021
89
August, 2017
47
July, 2019
38
May, 2021
27
March, 2020
25
February, 2020
19
November, 2019
8
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1837
bam
1689
bigWig
1074
tsv
736
bed narrowPeak
558
bigBed narrowPeak
342
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
1
tagAlign bed3+
Organism
1074
Homo sapiens
Biosample type
1074
tissue
156
primary cell
131
in vitro differentiated cells
109
cell line
4
stem cell
Organ
457
connective tissue
399
adipose tissue
273
pancreas
154
liver
111
heart
58
bone element
23
brain
14
blood vessel
14
vasculature
12
kidney
7
limb
7
musculature of body
5
eye
5
nerve
4
artery
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1074
AMP
Genome assembly (visualization)
917
GRCh38
917
hg19
Lab
1074
AMP-T2D consortium
1
Bing Ren, UCSD
0
Stephen Parker, UMich
Audit category:
7
audit script error
3
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
1074 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
RNA microarray
tissue
adipose tissue
381
1
islet of Langerhans
260
6
liver
147
1
1
bone tissue
58
heart left ventricle
3
18
1
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