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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
50
total RNA-seq
26
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
115
Transcription
75
DNA accessibility
26
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
RNA binding protein
1
transcription factor
Date released
68
June, 2019
64
August, 2021
47
September, 2023
22
April, 2019
8
February, 2021
4
July, 2019
4
October, 2019
3
December, 2019
3
May, 2023
Available data
97
bam
91
bigWig
89
bed narrowPeak
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
62
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
223
Homo sapiens
Biosample type
223
tissue
34
primary cell
19
cell line
Organ
536
connective tissue
477
adipose tissue
413
pancreas
338
liver
264
heart
261
brain
223
kidney
146
bone element
114
limb
92
blood vessel
92
vasculature
81
musculature of body
42
nerve
35
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
176
AMP
47
KPMP
Genome assembly (visualization)
92
hg19
90
GRCh38
Lab
109
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
Audit category:
7
audit script error
assay_title!
ATAC-seq
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
223 results
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DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
13
64
49
26
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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