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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
712
ChIP-seq
ATAC-seq
180
single cell RNA-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
Assay category
1205
Transcription
712
DNA binding
206
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
459
histone
264
broad histone mark
195
narrow histone mark
158
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
537
February, 2021
282
August, 2017
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1659
bam
1572
bigWig
1067
tsv
627
bed narrowPeak
512
bigBed narrowPeak
348
fastq
207
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
Organism
2278
Homo sapiens
Biosample type
2287
tissue
856
primary cell
597
cell line
346
in vitro differentiated cells
10
stem cell
Organ
540
connective tissue
482
adipose tissue
439
pancreas
334
liver
266
heart
220
kidney
176
brain
146
bone element
81
musculature of body
70
blood vessel
70
vasculature
47
limb
24
spleen
20
lung
18
ureter
11
artery
8
eye
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2201
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1542
GRCh38
1473
hg19
Lab
2068
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
Struan F.A. Grant, CHOP
month_released!
October, 2019
BIOSAMPLE
ASSAY
2287 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
278
50
6
1
7
3
1
1
liver
166
140
1
2
3
1
1
1
1
kidney
49
23
64
13
6
1
1
1
bone element
84
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