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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
722
ChIP-seq
ATAC-seq
178
DNase-seq
171
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
Assay category
1218
Transcription
722
DNA binding
200
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
537
February, 2021
253
August, 2017
199
October, 2019
170
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
93
May, 2019
71
July, 2019
70
November, 2017
66
April, 2019
47
September, 2023
45
October, 2018
40
May, 2021
40
May, 2024
38
March, 2020
36
December, 2017
28
May, 2022
25
February, 2020
23
November, 2018
20
November, 2019
April, 2020
16
February, 2023
12
October, 2017
8
January, 2021
6
April, 2018
6
January, 2019
4
May, 2023
3
December, 2018
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1729
bigWig
1676
bam
1075
tsv
776
bed narrowPeak
558
bigBed narrowPeak
281
fastq
211
bed broadPeak
202
bed bed3+
186
tagAlign
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2302
Homo sapiens
Biosample type
2309
tissue
853
primary cell
547
cell line
315
in vitro differentiated cells
9
stem cell
Organ
517
connective tissue
458
adipose tissue
412
pancreas
294
liver
258
heart
236
brain
218
kidney
146
bone element
97
limb
79
blood vessel
79
vasculature
77
musculature of body
31
nerve
29
artery
28
eye
18
ureter
16
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2242
AMP
47
KPMP
20
T1D
Genome assembly (visualization)
1698
GRCh38
1630
hg19
Lab
2109
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
3
Bing Ren, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
April, 2020
August, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
2309 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
1
3
1
islet of Langerhans
292
58
1
6
4
7
3
1
1
liver
167
102
2
1
3
1
1
1
1
kidney
49
21
13
64
6
1
1
1
bone element
84
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