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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
897
ChIP-seq
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
86
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
897
DNA binding
209
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
186
control
94
transcription factor
28
RNA binding protein
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
275
August, 2017
226
October, 2019
193
May, 2020
164
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
28
May, 2022
25
February, 2020
23
November, 2018
20
November, 2019
18
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1833
bam
1720
bigWig
1075
tsv
767
bed narrowPeak
549
bigBed narrowPeak
338
fastq
231
tagAlign
205
bed bed3+
205
bed broadPeak
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2505
Homo sapiens
Biosample type
2505
tissue
885
primary cell
627
cell line
351
in vitro differentiated cells
8
stem cell
Organ
540
connective tissue
481
adipose tissue
436
pancreas
340
liver
274
heart
261
brain
224
kidney
146
bone element
114
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
21
spleen
19
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2420
AMP
47
KPMP
20
T1D
18
LungMap
Genome assembly (visualization)
1692
GRCh38
1624
hg19
Lab
2283
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
18
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
ATAC-seq
month_released!
August, 2018
target.investigated_as!
other context
BIOSAMPLE
ASSAY
2505 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
1
liver
167
145
1
2
3
1
1
1
1
kidney
49
27
64
13
6
1
1
1
bone element
84
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