Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
587
total RNA-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
907
DNA binding
777
Transcription
210
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
282
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1399
bam
1285
bigWig
776
bed narrowPeak
623
tsv
558
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
1971
Homo sapiens
Biosample type
1980
tissue
841
primary cell
546
cell line
330
in vitro differentiated cells
10
stem cell
Organ
443
pancreas
339
liver
274
heart
261
brain
216
kidney
114
limb
97
connective tissue
96
adipose tissue
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
bone element
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1894
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1257
GRCh38
1189
hg19
Lab
1757
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
month_released!
February, 2021
organ_slims!
skin of body
BIOSAMPLE
ASSAY
1980 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
71
292
1
6
7
4
3
1
1
4
liver
145
167
2
3
1
1
1
1
kidney
27
49
13
59
6
1
1
1
heart left ventricle
35
3
3
18
4
1
1
1
left cardiac atrium
40
1
18
+ See 160 more…
See all biosamples
Download