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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
996
total RNA-seq
448
ChIP-seq
179
single cell RNA-seq
174
DNase-seq
ATAC-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1191
Transcription
448
DNA binding
204
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
459
histone
broad histone mark
195
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
209
August, 2017
193
May, 2020
October, 2019
165
August, 2021
163
June, 2019
120
July, 2018
71
July, 2019
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
May, 2021
40
November, 2017
38
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
May, 2024
20
November, 2019
19
April, 2020
February, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
October, 2017
4
May, 2023
4
November, 2020
3
December, 2019
3
January, 2019
1
August, 2022
1
March, 2019
Available data
1476
bam
1358
bigWig
1063
tsv
413
bed narrowPeak
338
bigBed narrowPeak
303
fastq
195
bed bed3+
187
bed broadPeak
172
bigBed broadPeak
153
txt
113
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
Organism
2006
Homo sapiens
Biosample type
2011
tissue
670
primary cell
582
cell line
288
in vitro differentiated cells
9
stem cell
Organ
520
connective tissue
462
adipose tissue
395
pancreas
312
liver
211
heart
210
kidney
142
bone element
109
brain
65
musculature of body
48
blood vessel
48
vasculature
43
limb
20
lung
20
spleen
18
ureter
11
artery
4
eye
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1932
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1339
GRCh38
1314
hg19
Lab
1815
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
16
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
ATAC-seq
month_released!
February, 2023
October, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2011 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
273
36
6
1
5
3
1
1
4
liver
166
121
1
2
3
1
1
1
1
kidney
49
13
64
13
6
1
1
1
bone element
84
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