Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
ATAC-seq
12
total RNA-seq
7
DNase-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
108
DNA binding
18
Transcription
7
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
78
histone
78
histone modification
52
broad histone mark
27
control
26
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
66
October, 2019
50
May, 2019
6
August, 2021
5
July, 2019
4
February, 2020
3
June, 2019
3
March, 2020
Available data
125
bam
97
bigWig
88
bed narrowPeak
88
bigBed narrowPeak
19
tsv
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
137
Homo sapiens
Biosample type
137
tissue
58
cell line
31
primary cell
Organ
541
connective tissue
482
adipose tissue
435
pancreas
340
liver
274
heart
261
brain
224
kidney
146
bone element
114
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
137
AMP-T2D consortium
assay_title!
ATAC-seq
month_released!
January, 2021
BIOSAMPLE
ASSAY
137 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
tibial nerve
35
5
2
tibial artery
23
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
+ See 2 more…
See all biosamples
Download