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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
904
ChIP-seq
849
total RNA-seq
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1045
Transcription
904
DNA binding
210
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
282
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
28
May, 2022
25
February, 2020
23
November, 2018
20
November, 2019
19
April, 2020
15
October, 2017
12
February, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1666
bam
1552
bigWig
901
tsv
773
bed narrowPeak
555
bigBed narrowPeak
343
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
69
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2239
Homo sapiens
Biosample type
2248
tissue
839
primary cell
631
cell line
352
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
482
adipose tissue
340
liver
323
pancreas
274
heart
261
brain
224
kidney
bone element
114
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
21
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2162
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1524
GRCh38
1456
hg19
Lab
2025
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
27
inconsistent control
9
audit script error
6
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
month_released!
July, 2018
organ_slims!
bone element
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
2248 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
2
382
3
1
liver
145
167
1
2
3
1
1
1
1
islet of Langerhans
71
172
6
1
7
4
3
1
1
4
kidney
27
49
64
13
6
1
1
1
heart left ventricle
35
3
18
3
4
1
1
1
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