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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
906
total RNA-seq
876
ChIP-seq
ATAC-seq
179
single cell RNA-seq
146
DNase-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1100
Transcription
876
DNA binding
177
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
603
histone modification
602
histone
315
narrow histone mark
287
broad histone mark
183
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
256
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
131
June, 2019
July, 2018
108
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
64
July, 2019
47
September, 2023
46
December, 2017
40
May, 2021
40
May, 2024
33
March, 2020
26
May, 2022
26
November, 2018
23
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1681
bam
1555
bigWig
952
tsv
723
bed narrowPeak
518
bigBed narrowPeak
342
fastq
223
tagAlign
172
bed bed3+
166
bed broadPeak
156
txt
144
bigBed broadPeak
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2305
Homo sapiens
Biosample type
2314
tissue
825
primary cell
603
cell line
349
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
482
adipose tissue
338
liver
323
pancreas
274
heart
261
brain
224
kidney
146
bone element
114
limb
95
blood vessel
95
vasculature
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2228
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1541
GRCh38
1455
hg19
Lab
2091
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
25
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
month_released!
July, 2018
organ_slims!
musculature of body
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
2314 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
liver
167
143
1
2
3
1
1
1
1
islet of Langerhans
172
71
6
1
7
4
3
1
1
4
kidney
49
27
64
13
6
1
1
1
bone element
84
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