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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1005
total RNA-seq
864
ChIP-seq
ATAC-seq
179
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1200
Transcription
864
DNA binding
209
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
322
narrow histone mark
293
broad histone mark
184
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
280
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
111
May, 2019
82
November, 2017
76
April, 2019
71
July, 2019
63
October, 2018
47
September, 2023
46
December, 2017
40
May, 2021
38
March, 2020
35
May, 2024
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1806
bam
1696
bigWig
1075
tsv
744
bed narrowPeak
532
bigBed narrowPeak
318
fastq
224
tagAlign
208
bed broadPeak
202
bed bed3+
176
bigBed broadPeak
150
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2437
Homo sapiens
Biosample type
2446
tissue
783
primary cell
568
cell line
341
in vitro differentiated cells
10
stem cell
Organ
536
connective tissue
477
adipose tissue
429
pancreas
318
liver
264
heart
246
brain
223
kidney
146
bone element
114
limb
92
blood vessel
92
vasculature
79
musculature of body
42
nerve
35
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2360
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1668
GRCh38
1604
hg19
Lab
2254
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
17
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
21
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
month_released!
May, 2022
October, 2017
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2446 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
286
69
6
1
7
4
3
1
1
4
liver
147
144
1
2
3
1
1
1
1
kidney
49
26
64
13
6
1
1
1
bone element
84
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