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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
442
ChIP-seq
ATAC-seq
180
single cell RNA-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1205
Transcription
442
DNA binding
206
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
459
histone
broad histone mark
195
narrow histone mark
154
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
209
August, 2017
193
May, 2020
October, 2019
165
August, 2021
163
June, 2019
120
July, 2018
71
July, 2019
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
May, 2021
40
November, 2017
38
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
May, 2024
20
November, 2019
19
April, 2020
16
February, 2023
8
January, 2021
7
December, 2018
6
April, 2018
September, 2017
5
October, 2017
4
May, 2023
4
November, 2020
3
December, 2019
3
January, 2019
1
August, 2022
1
March, 2019
Available data
1470
bam
1358
bigWig
1067
tsv
413
bed narrowPeak
338
bigBed narrowPeak
297
fastq
193
bed bed3+
187
bed broadPeak
172
bigBed broadPeak
157
txt
113
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
Organism
2016
Homo sapiens
Biosample type
2021
tissue
746
primary cell
588
cell line
292
in vitro differentiated cells
9
stem cell
Organ
520
connective tissue
462
adipose tissue
396
pancreas
312
liver
212
heart
210
kidney
146
bone element
109
brain
65
musculature of body
48
blood vessel
48
vasculature
43
limb
20
lung
20
spleen
18
ureter
11
artery
8
eye
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1935
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1337
GRCh38
1312
hg19
Lab
1818
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
ATAC-seq
month_released!
October, 2019
September, 2017
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2021 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
278
30
6
1
7
3
1
1
4
liver
166
121
1
2
3
1
1
1
1
kidney
49
13
64
13
6
1
1
1
bone element
84
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